!
!   $Log: S3SofieRet.emt,v $
!   Revision 1.7  2008/06/27 13:54:07  deaver
!   All the things needed for the NLTE
!
!   Revision 1.6  2008/02/22 20:55:16  deaver
!   added CAlc_2_7_offset and also a C++ routine apply_ncep_offset
!
!   Revision 1.5  2008/02/11 19:21:46  deaver
!   Just some cleaning up
!
!   Revision 1.4  2008/02/01 15:08:09  deaver
!   Significant clean up..  Its all new code no
!   w.
!
!   Revision 1.3  2008/02/01 14:28:35  deaver
!   added load_fov_offsets and dump_initial..
!   removed fuse.o and dumptran.o
!
!   Revision 1.2  2008/01/25 16:04:39  deaver
!   This has had lots of modules added commented from the AGU version
!
!   Revision 1.1  2007/12/19 18:18:34  deaver
!   Initial revision
!
!
spct: PRE_EVENT_LOOP 		:./S3/sofie_pre_event_loop.pct;
spct: EVENT_LOOP 		:./S3/sofie_event_loop.pct;
spct: POST_EVENT_LOOP		:./S3/sofie_post_event_loop.pct;
spct: CHANNEL_LOOP		:./S3/sofie_channel_loop.pct;
spct: READ_TABLES		:./S3/read_tables.pct;
spct: PATH			:./S3/sofie_path.pct;
spct: PATH_MASTER		:./S3/sofie_path_master.pct;
spct: ONION_PEEL                :./S3/sofie_onion_peel.pct;
spct: POST_RETRIEVAL		:./S3/sofie_post_retrieval.pct;
spct: SETUP_FOR_CHANNEL		:./S3/sofie_setup_for_channel.pct;
spct: FORWARD			:./S3/sofie_forward.pct;
!spct: CALC_2_7_OFFSET	  	:./S3/sofie_calc_2_7_offset.pct;
spct: AUX_DATA_OUTPUT		:./S3/sofie_output_auxillary.pct;
spct: setup_nltetk          	: ./S3/setup_nltetk.pct;
spct: nlteco2init           : ./S3/nlteco2init.pct;
spct: ABEL_RETRIEVAL	: ./S3/sofie_abel_retrieval.pct;
spct: CORRECT_PMC       :  ./S3/sofie_correct_pmc.pct;
spct: CALC_SIG			: ./S3/sofie_calc_sig.pct;

!
! Fortran subroutines
!
proc: fs:	set_nvar , 
		readfasatm2,
                get_sabero_clim,
        check_tvib_qual,
        bend_fit,
        abel_inversion_refraction,
		lp_mass,
		kp_mpath,
		mp_path,
		openfile,
		closefile,
        copy_qmix,
	f_check_equal,
		init_radtran,
		hydro,
		sofie_tblbld,
dumptran,
!replace_meas_sig,
		mp_mass,
		set_var,
		mesh,
copy_qmix2,
		retrieval_options_setup,
	interpolate_pop_ratios,
    save_pop_ratios,
		f_dse,
!setatm,
setgasname,limbcalc,readconret_nlte,
           setuptvmodels_co2,setco2tvmdprm,inittvcalc_co2,
!set_model,
           p_tblbld,p_tvtblbld_co2,
!output,
check_pmc_date,
copy_profile,
sofie_find_ice,
mp_inita,
kp_inita,
p_inita,
lp_parmcset;
!perturb;
!,readsaberatm;
!
! C functions
!
proc: cs: 
	read_l1_event,
	check_products,
save_aero_extinc,
make_dv_extinction2,
	get_control_file,
	load_fovdata,
	load_fov_offsets,
	derivative,
	get_iblk_ids,
	create_sim_signal,
	calc_limb_refraction,
	calc_sim_exo,
	decide_to_process,
	get_waccmc2_climatology,
	get_msis_data,
    get_meas_refraction_angle,
    simulate_refraction_angle,
    create_merged_refrac,
!extrapolate_pmc_extinction,
!init_ref_aerosol,
	extend_tran_profile,
!update_ref_aerosol,
	fov_atm_convolution,
	insert_profile_db,
	create_z_grid,
	merge_into_clim,
	get_l1_zpt,
	get_l1_za,
	sofie_lbl_model,
	sofie_mega_model,
	make_db_connections,
    get_level1_data_replace,
        smooth_profile,
	kill_db_connections,
sofie_ice_t,
!dump_initial,
	insert_l2_summary,
init_aerosols,
adjust_l1_alts,
apply_ncep_offset;
!fpenab_;

!
! Object module list
!
objs:
f_check_equal.o,
check_tvib_qual.o,
bend_fit.o,
abel_inversion_refraction.o,
fillengy.o,
inittvcalc_co2.o,limbcalc.o,
           loctvmdst.o,
!output.o,out_lte.o,out_nlte.o,
           p_tblbld.o,p_tvtblbld_co2.o,readconret_nlte.o,
           readcontv_co2.o,readnlte.o,readsolspec.o,
!setatm.o,
           setco2tvmdprm.o,setgasname.o,
!set_model.o,
settvgasname.o,
           settvt_to_tvib.o,setuptvmodels_co2.o,set_zatv.o,tvcalc_co2.o,
           settvt.o,
!tvo3init.o,
!tvwrite.o,
!trapfpe.o,

p_inita.o,
perturb.o;
!  readsaberatm.o,read_puke.o;

!
! Library files
!
libs: 	-L./, -L../../lib, -L/usr/lib/mysql;
libs:  -lSOFIE_ret, -lBandco2tvib, -lBandtvib_common,-lRadtran, -lBandret;
libs:  -lGATS_Exception, -lm, -lCMarkup, -lGATS_DB,  -lmysqlclient, -lnetcdf ;
!, -llapack,-lblas;
libs: -llapack, -lblas, -lgsl, -lgslcblas;